One-to-n alignments

Command: compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2019/07/01/compare-matrices_2019-07-01.194616_6olJFM/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -format2 tf -strand DR -lth cor 0.8 -lth Ncor 0.3 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2019/07/01/compare-matrices_2019-07-01.194616_6olJFM/compare-matrices.tab

One-to-n matrix alignment; reference matrix: oligos_5-8nt_m1_shift0 ; 6 matrices ; sort_field=rank_mean

Matrix nameAligned logoscor Ncor logoDP NsEucl NSW rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank Aligned matrices
oligos_5-8nt_m1_shift0 (oligos_5-8nt_m1)                         
; oligos_5-8nt_m1; m=0 (reference); ncol1=22; shift=0; ncol=22; wwcATTTTGGGCCCAAAATkww
; Alignment reference
a	48	45	38	111	22	19	15	11	11	11	8	15	7	22	130	117	112	108	18	30	55	48
c	25	30	66	8	14	11	2	5	10	9	9	121	122	107	6	19	12	13	15	17	22	31
g	29	20	16	17	10	12	19	4	112	128	122	10	10	13	5	3	11	13	8	67	31	23
t	52	59	34	18	108	112	118	134	21	6	15	8	15	12	13	15	19	20	113	40	46	52
PK14653.1_M1643_1.02_CISBP_shift6 (PK14653.1:M1643_1.02:CISBP) 0.803 0.365 2.334 0.915 0.927 5 1 3 1 1 2.200 1 
; oligos_5-8nt_m1 versus PK14653.1_M1643_1.02_CISBP (PK14653.1:M1643_1.02:CISBP); m=1/5; ncol2=10; w=10; offset=6; strand=D; shift=6; score=    2.2; ------gTGGGCCCAc------
; cor=0.803; Ncor=0.365; logoDP=2.334; NsEucl=0.915; NSW=0.927; rcor=5; rNcor=1; rlogoDP=3; rNsEucl=1; rNSW=1; rank_mean=2.200; match_rank=1
a	0	0	0	0	0	0	9	5	0	8	8	12	8	9	68	16	0	0	0	0	0	0
c	0	0	0	0	0	0	14	11	0	0	11	69	84	91	16	60	0	0	0	0	0	0
g	0	0	0	0	0	0	60	16	91	84	69	11	0	0	11	14	0	0	0	0	0	0
t	0	0	0	0	0	0	17	68	9	8	12	8	8	0	5	10	0	0	0	0	0	0
TCP23_MA1066.1_JASPAR_shift8 (TCP23:MA1066.1:JASPAR) 0.839 0.305 4.046 0.888 0.900 1 2 1 4 4 2.400 2 
; oligos_5-8nt_m1 versus TCP23_MA1066.1_JASPAR (TCP23:MA1066.1:JASPAR); m=2/5; ncol2=8; w=8; offset=8; strand=D; shift=8; score=    2.4; --------GGGCCCAC------
; cor=0.839; Ncor=0.305; logoDP=4.046; NsEucl=0.888; NSW=0.900; rcor=1; rNcor=2; rlogoDP=1; rNsEucl=4; rNSW=4; rank_mean=2.400; match_rank=2
a	0	0	0	0	0	0	0	0	5	10	37	7	4	12	954	10	0	0	0	0	0	0
c	0	0	0	0	0	0	0	0	3	5	88	971	984	980	10	959	0	0	0	0	0	0
g	0	0	0	0	0	0	0	0	966	980	835	8	8	3	31	11	0	0	0	0	0	0
t	0	0	0	0	0	0	0	0	26	5	41	13	4	6	5	21	0	0	0	0	0	0
OsI_MA1050.1_JASPAR_rc_shift6 (OsI:MA1050.1:JASPAR_rc) 0.836 0.304 1.390 0.895 0.912 2 3 5 2 2 2.800 3 
; oligos_5-8nt_m1 versus OsI_MA1050.1_JASPAR_rc (OsI:MA1050.1:JASPAR_rc); m=3/5; ncol2=8; w=8; offset=6; strand=R; shift=6; score=    2.8; ------GTGGGCCC--------
; cor=0.836; Ncor=0.304; logoDP=1.390; NsEucl=0.895; NSW=0.912; rcor=2; rNcor=3; rlogoDP=5; rNsEucl=2; rNSW=2; rank_mean=2.800; match_rank=3
a	0	0	0	0	0	0	72	0	0	0	91	91	0	53	0	0	0	0	0	0	0	0
c	0	0	0	0	0	0	72	50	0	0	46	726	953	946	0	0	0	0	0	0	0	0
g	0	0	0	0	0	0	855	50	999	999	863	91	0	1	0	0	0	0	0	0	0	0
t	0	0	0	0	0	0	1	899	0	0	0	91	46	1	0	0	0	0	0	0	0	0
OsI_08196_M1658_1.02_CISBP_rc_shift6 (OsI_08196:M1658_1.02:CISBP_rc) 0.835 0.304 1.401 0.895 0.911 3 4 4 3 3 3.400 4 
; oligos_5-8nt_m1 versus OsI_08196_M1658_1.02_CISBP_rc (OsI_08196:M1658_1.02:CISBP_rc); m=4/5; ncol2=8; w=8; offset=6; strand=R; shift=6; score=    3.4; ------GTGGGCCC--------
; cor=0.835; Ncor=0.304; logoDP=1.401; NsEucl=0.895; NSW=0.911; rcor=3; rNcor=4; rlogoDP=4; rNsEucl=3; rNSW=3; rank_mean=3.400; match_rank=4
a	0	0	0	0	0	0	7	0	0	0	9	9	0	5	0	0	0	0	0	0	0	0
c	0	0	0	0	0	0	7	5	0	0	5	73	95	95	0	0	0	0	0	0	0	0
g	0	0	0	0	0	0	86	5	100	100	86	9	0	0	0	0	0	0	0	0	0	0
t	0	0	0	0	0	0	0	90	0	0	0	9	5	0	0	0	0	0	0	0	0	0